When using ribodiff for TE analysis, the following error occurs:
Traceback (most recent call last): File ".\TE.py", line 81, in <module> main() File ".\TE.py", line 33, in main data = FileIn.parse_expt() File "Lib\site-packages\ribodiff\loadinput.py", line 74, in parse_expt seqType = np.unique(self.exper[:, 1]) IndexError: too many indices for array
After checking that the file format and requirements used are all correct, I found that the problem is that the software installed by conda does not apply to my system
bioconda/ribodiff 0.2.2 linux-64 noarch osx-64
The above three can be used, but I can’t because of windows, and then find the install of the author in git
https://github.com/ratschlab/RiboDiff/blob/master/INSTALL
Follow the steps to install